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Home/Applications/Life science/Nucleic Acid Processing
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Bubble and pressure sensing in nucleic-acid processing

Application guide

Explore sensing locations, coordination and configuration for identifying liquid shortages and bubbles during nucleic-acid transfers, with links to operating and validation tasks.

Applicable architecture

This page covers liquid handling in nucleic acid processing. For magnetic-bead extraction, first establish whether the architecture transfers liquid or beads. Pumps serve only the liquid operations actually required; separation steps do not all involve pumping through fixed tubing.[3]

Application guides

Nucleic acid processing application guide

Nucleic acid processing fluidics overview
Syringe pumps in nucleic acid processing
Air-Displacement Pipetting Pumps for Nucleic Acid Processing
Sample preparationWashing and elution
Multiport rotary valves in nucleic acid processing
Path switching
Bubble and pressure sensing in nucleic-acid processing
Tubing and fittings in nucleic-acid processing

ON THIS PAGE

What do these products do in this instrument?Match sensing locations to specific fluidic problemsConnect signals, action windows and recovery conditionsTranslate actual branch conditions into configuration requirementsCompare product configurations by the roles on this pageRelated operations and architecture comparisonsConfirm product roles in actual operationCan dispensing be repeated immediately after bubbles or abnormal pressure are detected?ReferencesRelated guides

01What do these products do in this instrument?

Bubble and pressure detection: identify supply loss and bubbles during transfer

Provide pressure or bubble signals in compatible fixed branches. The controller associates them with extraction, washing and elution stages. Before resuming, check the reagents and products already delivered.

ABD provides bubble or liquid-state signals for defined tubing; PDM5 provides pressure information at a defined location. Configure module, position and action window separately; the controller associates affected samples or tasks.

02Match sensing locations to specific fluidic problems

Bubble modules report bubble or liquid state in defined tube segments; pressure modules report pressure at defined positions. Before selecting mounting points, define the phase and abnormality to observe: aspiration, delivery, source depletion or branch-load changes. Associate sensor positions with affected samples, cuvettes or stations.

03Connect signals, action windows and recovery conditions

The same signal may mean different things at different valve positions or operating phases. Record normal ranges and faults with actual liquids, tubing and sequences. The controller combines action timing, confirmed delivery status, volume records and sample identity to pause, review or recover; one pressure change cannot directly identify a blockage location or specific cause. Distinguish measured, estimated and unknown volumes; completion of a command does not prove actual liquid delivery.

04Translate actual branch conditions into configuration requirements

Configuration requirements for bubble and pressure detection in nucleic acid processing
ConditionTo confirm
Installation conditionsSpecify tubing dimensions, liquid, sensing location and branch to observe.
Timing and baselineRecord valve positions, pump actions, normal changes and fault-detection windows.
Abnormality handlingAssociate affected containers with confirmed delivery status and volume records; define conditions for review, continuation or re-execution. Distinguish measured, estimated and unknown volumes; completion of a command does not prove actual liquid delivery.
Operations supported in this instrument
OperationSpecific operating conditions
Sample preparationDose per operation, total cycle volume, replenishment/bottle-change interval, backpressure and receiving geometry
Washing and elutionSolid-phase location and retention target, wash cycles, aspiration height, residue, destination and downstream assay requirements

05Compare product configurations by the roles on this page

Configuration options for the product roles on this page
ProductConfiguration optionConditions to verify
ABD bubble-detection moduleBubble or liquid-state identification in defined tubingValidate detection and false alarms for tubing material, dimensions, medium and action window
PDM5 pressure-detection modulePressure-state monitoring at a defined fluidic locationConfirm range and wetted configuration by model; validate normal baseline and abnormalities separately
  • ABD bubble-detection module
  • PDM5 pressure-detection module

06Related operations and architecture comparisons

Sample preparation

Assign container identities and destinations to each step, and establish programs for the actual lysis and binding formulations. After an interruption, confirm whether the product has already been transferred before deciding whether to complete the step or stop.

  • Sample preparation

Washing and elution

Adjust aspiration height to the solid-phase position and vessel geometry, and assess low-volume collection separately for elution. Evaluate recovery, residual liquid and the next reaction. Volume accuracy alone does not establish washing effectiveness.

  • Washing and elution

07Confirm product roles in actual operation

Operating-point validation and fault localization
OperationMeasurements and observationsPriority checks
Sample preparationUse actual media to check first, middle and last doses and delivery after bottle changes; confirm received volume and timing rather than substituting commanded steps for volumeEmpty sources, bubbles, nozzle droplets and backpressure changes affect first or last doses
Washing and elutionEvaluate solid-phase loss, post-wash residue and downstream assay background or nucleic-acid recovery togetherInsufficient capture, incorrect aspiration height, uneven coverage or pooling may impair washing and recovery

Record product volume, recovery and downstream results, and check sample-to-sample contamination.

08Can dispensing be repeated immediately after bubbles or abnormal pressure are detected?

First establish whether partial delivery has occurred and which container is affected. Immediate repetition may double-dose it. Act on the actual state and recheck the first cycle after recovery.

Extraction and library-preparation liquid handling differ in contamination and outcome requirements. Confirm research workflows and clinical diagnostic methods separately.

References

View references (3)
  1. [1]FOREACH ABD bubble-detection module: configurations and specifications
  2. [2]FOREACH PDM5 pressure-detection module: configurations and specifications
  3. [3]Thermo Fisher KingFisher: Binding, Washing and Elution by Magnetic-Bead Transfer

Related guides

  • Return to the nucleic acid processing overview

Related Products

ABD bubble-detection module; representative configuration. Select capacity, materials and interfaces for the application.

ABD bubble-detection module

PDM5 pressure-detection module; representative configuration. Select capacity, materials and interfaces for the application.

PDM5 pressure-detection module

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What is flow resistance calculation for? Using the Foreach calculator in fluid-path design and selection

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Discuss a nucleic acid processing configuration

Provide a fluid-path diagram, actual liquids and pressures in each state. Validate detection and false alarms for the tubing, dimensions, media and action window. Confirm range and wetted configuration by model, then test normal baselines and faults separately against the guide's validation objectives.

Contact an engineer