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Home/Applications/Life science/Nucleic Acid Processing
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Syringe pumps in nucleic acid processing

Application guide

This page explains the syringe pump's location, coordination and configuration requirements for fixed-path reagent metering in nucleic acid processing, with links to the relevant operating and validation tasks.

Applicable architecture

This page covers liquid handling in nucleic acid processing. For magnetic-bead extraction, first establish whether the architecture transfers liquid or beads. Pumps serve only the liquid operations actually required; separation steps do not all involve pumping through fixed tubing.[3]

Application guides

Nucleic acid processing application guide

Nucleic acid processing fluidics overview
Syringe pumps in nucleic acid processing
Air-Displacement Pipetting Pumps for Nucleic Acid Processing
Sample preparationWashing and elution
Multiport rotary valves in nucleic acid processing
Path switching
Bubble and pressure sensing in nucleic-acid processing
Tubing and fittings in nucleic-acid processing

ON THIS PAGE

What do these products do in this instrument?Organize syringe metering around aspiration, holding and dispensingMap valve connections to every actionTranslate actual branch conditions into configuration requirementsCompare product configurations by the roles on this pageRelated operations and architecture comparisonsConfirm product roles in actual operationFor repeated dispensing from one chamber, is checking total volume enough?ReferencesRelated guides

01What do these products do in this instrument?

Syringe pumps: reagent metering through fixed paths

In fixed fluidics, aspirate and dispense the reagents required by the method, coordinated with source selection and priming. Where magnetic rods transfer the solid phase, pumps serve only the replenishment or liquid-transfer branches actually present.

HLD and HMD organize aspiration/dispensing paths with rotary and solenoid valves respectively. Capacity budgets include useful volume, holding stages and replenishment points; valve states and pump actions together create each delivery.

02Organize syringe metering around aspiration, holding and dispensing

Syringe drives use controlled displacement for aspiration, holding and dispensing. With direct contact, source liquid enters the metering chamber; with system-liquid drive, sample can remain at the probe tip or a designated tube segment. Define wetted coverage before capacity, cleaning and replenishment. For repeated dispensing, track current inventory, delivered volume and next replenishment time.

03Map valve connections to every action

Check port connections, opening/closing sequence and power-off state separately for rotary- and solenoid-valve configurations. Changing source does not automatically remove old liquid from the chamber or shared tubing. Plan flushing for formulation and residue requirements, then evaluate the first dose after switching and dose-to-dose variation.

04Translate actual branch conditions into configuration requirements

Syringe-pump configuration for nucleic-acid processing
ConditionTo confirm
Stored volume and timingDefine volume per operation, consecutive dispensing count, holding time and permitted replenishment window.
Valve positions and destinationsProvide a source, receiver and waste port diagram with open/closed and power-off states.
Liquid changes and first doseCheck shared residue, priming destination and actual received volume after standby or source changes.
Operations supported in this instrument
OperationSpecific operating conditions
Sample preparationDose per operation, total cycle volume, replenishment/bottle-change interval, backpressure and receiving geometry

05Compare product configurations by the roles on this page

Configuration options for the product roles on this page
ProductConfiguration optionConditions to verify
HLD rotary-valve syringe pumpAspiration, holding and dispensing with a rotary valveCheck source/outlet valve positions, capacity budget and replenishment timing
HMD solenoid-valve syringe pumpMetered aspiration and dispensing with solenoid valvesCheck open/closed and power-off states, working volume and replenishment cycle
  • HLD rotary-valve syringe pump
  • HMD solenoid-valve syringe pump

06Related operations and architecture comparisons

Sample preparation

Assign container identities and destinations to each step, and establish programs for the actual lysis and binding formulations. After an interruption, confirm whether the product has already been transferred before deciding whether to complete the step or stop.

  • Sample preparation

07Confirm product roles in actual operation

Operating-point validation and fault localization
OperationMeasurements and observationsPriority checks
Sample preparationUse actual media to check first, middle and last doses and delivery after bottle changes; confirm received volume and timing rather than substituting commanded steps for volumeEmpty sources, bubbles, nozzle droplets and backpressure changes affect first or last doses

Record product volume, recovery and downstream results, and check sample-to-sample contamination.

08For repeated dispensing from one chamber, is checking total volume enough?

Measure each received dose, especially the first and last. Even when total volume is near target, individual errors may differ. Relate replenishment, valve switching and receiving actions to each result.

Extraction and library-preparation liquid handling differ in contamination and outcome requirements. Confirm research workflows and clinical diagnostic methods separately.

References

View references (3)
  1. [1]FOREACH HLD rotary-valve syringe pump: configurations and specifications
  2. [2]FOREACH HMD solenoid-valve syringe pump: configurations and specifications
  3. [3]Thermo Fisher KingFisher: Binding, Washing and Elution by Magnetic-Bead Transfer

Related guides

  • Return to the nucleic acid processing overview

Related Products

HLD rotary-valve syringe pump; representative configuration. Select capacity, materials and interfaces for the application.

HLD rotary-valve syringe pump

HMD solenoid-valve syringe pump; representative configuration. Select capacity, materials and interfaces for the application.

HMD solenoid-valve syringe pump

Related Technical Articles

What Is a Programmable Syringe Pump? Operation, Fluid Routing and Automation

A programmable syringe pump uses a motor to control syringe plunger displacement and speed, executing aspiration, dispensing, pauses and repeated actions through commands. With a routing valve, it can connect reagent reservoirs, reaction vessels and wash paths into an automated dispensing process. Instrument development therefore needs to define volume, fluid connections and timing together.

2026-09-28View Details

What Is Pipetting? Manual and Automated Workflows Compared

Pipetting is the transfer of a specified volume of liquid from one location to another. Examples include moving 100 µL from a sample tube into a reaction vessel, or adding sample and diluent in a defined ratio.

2026-09-29View Details

What is a programmable automatic air-displacement pipetting pump?

A programmable automatic air-displacement pipetting pump is a liquid-handling component whose aspiration, dispense, speeds and sequence are set through control commands. This article focuses on air-displacement modules that use disposable tips in OEM instruments, with FOREACH SMTP2 as an example of operation, monitoring and selection limits.

2026-09-28View Details

Discuss a nucleic acid processing configuration

Provide a fluid-path diagram, actual liquids and pressures in every state. Specify source and outlet valve positions, capacity budgets and refill timing, including open, closed and power-off states, working volumes and replenishment cycles. Compare configurations against the validation objectives in this guide.

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