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Home/Applications/Synthetic biology/Online sampling
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Online sampling: analytical targets, representativeness and contamination-control boundaries

Application guide

Online sampling must define what is measured, when a sample represents the process and the permitted volume consumption. The sampling port, transfer path and pretreatment jointly determine sample properties. Filtration is not automatically required; measuring biomass or cells may require different handling from dissolved metabolites.

Application guides

Online Sampling Guide

Online sampling fluidics overview
Syringe pumps in online sampling
Sample collectionPretreatment
Fluidic Valves for Online Sampling
Flexible-tube control
Bubble and pressure detection in online sampling
Fluidic Connections and Protection for Online Sampling
Filtration

ON THIS PAGE

Locate the task in the fluid path firstCommon product roles and application guidesOperating requirements differ by stepSample collection: assess representativeness using paired samplesFiltration: retain or remove material according to the analytePretreatment: preserve timing and actual-volume recordsFlexible-tube control: validate pinching and replacement proceduresExplore configurations through product application guidesValidate the complete cycle through application resultsCommon selection and recovery questionsReferencesRelated guides

01Locate the task in the fluid path first

Process sampling port→Stagnant-volume refresh→Sample metering→Method-specified pretreatment→Analytical or receiving vessel
Illustrative task sequence. Confirm sampling, washing, waste and monitoring branches separately against the instrument drawings.

Arrows indicate task relationships, not that every component is connected in series in one tube. Check valve positions, pump wetted boundaries and operating states for each branch.

Define analytical targets and sampling budgets before selecting renewal, discard or return strategies. A closed path, pinched tube and aseptic sampling are not equivalent. Confirm contamination boundaries for the complete path and procedure.

02Common product roles and application guides

Explore product applications by their role in the instrument
Product categoryRole in this instrument
Syringe pumpSampling-volume and transfer control
Fluidic valvesSampling, refresh and receiver routing; sampling-tube shutoff
Bubble and pressure detectionSampling signals the controller can associate with sample identity
Tubing connections and protectionMethod-specified sample treatment; connections from process port through pretreatment to analysis
  • Syringe pumps in online sampling
  • Fluidic Valves for Online Sampling
  • Bubble and pressure detection in online sampling
  • Fluidic Connections and Protection for Online Sampling

03Operating requirements differ by step

Define fluid-path responsibilities before examining individual operations
StageTask categoryOperating conditions to define
Sample collection: assess representativeness using paired samplesSample renewal and representativenessAnalyte, sampling interval, renewal of stagnant sections, discard-volume budget and permitted pretreatment
Filtration: retain or remove material according to the analyteProtection and method conditionsTarget components, pore size/material, filtration area, pressure drop, check-valve cracking pressure and leakage
Pretreatment: preserve timing and actual-volume recordsProportion-based preparationActual volumes of original sample, diluent or internal standard; concentrations at each stage; mixing and resampling conditions
Flexible-tube control: validate pinching and replacement proceduresTubing-control conditionsTubing material, OD/wall thickness, pressure/vacuum, pinch-off and cycle count

04Sample collection: assess representativeness using paired samples

Record sampling interval, retained volume and discard destination. Compare target results with reference samples before setting renewal time.

  • Sample collection

05Filtration: retain or remove material according to the analyte

Filter adsorption, increasing pressure drop and replacement can change a sample. Record method-specified particle treatment and before/after filtration differences.

  • Filtration

06Pretreatment: preserve timing and actual-volume records

Arrange dilution, preservation or other treatment according to the analytical method. Measure recovery and blanks, and record sample arrival time.

  • Pretreatment

07Flexible-tube control: validate pinching and replacement procedures

Pinching reduces liquid contact with the valve body, but tubing, fittings and maintenance remain within the contamination-control boundary. After installation, check closure, sealing and cleaning or sterilization procedures.

  • Flexible-tube control

08Explore configurations through product application guides

  • Syringe pumps in online sampling
  • Fluidic Valves for Online Sampling
  • Bubble and pressure detection in online sampling
  • Fluidic Connections and Protection for Online Sampling

09Validate the complete cycle through application results

Compare process and collected samples, checking target retention, contamination and reactor-volume changes.

Plan operating-point validation and fault investigation for each step
Step to validateMeasurements or observationsPriority troubleshooting checks
Sample collection: assess representativeness using paired samplesMeasure renewal time at the analytical or receiving interface and assess target representativeness using paired samplesOld-sample mixing, settling, adsorption or insufficient renewal time can make the sample unrepresentative of its source.
Filtration: retain or remove material according to the analyteEvaluate targets before and after filtration, blanks, recovery or method-specified metrics. Check increasing pressure drop, backflow protection and recovery after replacement.Clogging, adsorption, leaks or excessive cracking pressure can alter delivery or method results
Pretreatment: preserve timing and actual-volume recordsMeasure each branch's delivery, received ratio and mixing uniformity separately, then check assay responseSmall-volume errors, shared residual liquid or inadequate mixing may alter the actual ratio
Flexible-tube control: validate pinching and replacement proceduresMeasure closed-state leakage, open-state resistance and tubing condition after cycling. Check complete-path sealing and contamination-control boundaries after maintenance.Tube fatigue, incorrect installation or differential pressure outside configuration limits may prevent closure

Removing cell aggregates may change the measured target. Reduced valve-body contact through a pinch valve does not make the entire path sterile.

10Common selection and recovery questions

Should every online sample be filtered?

Define whether the target is cells, biomass or dissolved constituents, then choose retained and removed fractions according to the method. Check adsorption, pressure drop and replacement recovery rather than selecting solely to prevent clogging.

Does a tubing-pinch arrangement establish sterile sampling?

Also assess the complete boundary formed by tubing, fittings, sampling ports, assembly and maintenance under actual procedures. Validate pinch sealing separately from the path after cleaning or sterilization.

References

View references (3)
  1. [1]FOREACH syringe pumps: configurations and specifications
  2. [2]FOREACH Tubing-Pinch Options, Discussed by Project: Configurations and Specifications
  3. [3]FOREACH Filters: Configurations and Specifications

Related guides

  • Analyte recovery and timing in analytical sample preparation

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HLD rotary-valve syringe pump; representative configuration. Select capacity, materials and interfaces for the application.

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PE-Series Filters; representative configuration. Select capacity, materials and interfaces for the application.

PE-Series Filters

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Discuss your online sampling fluidics

Provide a fluid-path diagram, actual liquids and pressures in each state. Specify representativeness, discard, stroke, tubing, pinch closure, maintenance, target and pressure drop. Compare configurations against the guide's validation objectives.

Contact an engineer